To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MethylSeekR")

In most cases, you don't need to download the package archive at all.

MethylSeekR

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see MethylSeekR.

Segmentation of Bis-seq data

Bioconductor version: 3.2

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

Citation (from within R, enter citation("MethylSeekR")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MethylSeekR")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeekR")

PDF		MethylSeekR
PDF		Reference Manual

biocViews	DNAMethylation, MethylSeq, Sequencing, Software
Version	1.10.0
In Bioconductor since	BioC 2.12 (R-3.0) (3 years)
License	GPL (>=2)
Depends	rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports	IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg18
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	methylPipe
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	MethylSeekR_1.10.0.tar.gz
Windows Binary	MethylSeekR_1.10.0.zip
Mac OS X 10.6 (Snow Leopard)	MethylSeekR_1.10.0.tgz
Mac OS X 10.9 (Mavericks)	MethylSeekR_1.10.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/MethylSeekR/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/MethylSeekR/
Package Downloads Report	Download Stats

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