To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GoogleGenomics")

In most cases, you don't need to download the package archive at all.

GoogleGenomics

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see GoogleGenomics.

R Client for Google Genomics API

Bioconductor version: 3.2

Provides an R package to interact with the Google Genomics API.

Author: Cassie Doll [aut], Nicole Deflaux [aut], Siddhartha Bagaria [aut, cre]

Maintainer: Siddhartha Bagaria <sidb at google.com>

Citation (from within R, enter citation("GoogleGenomics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GoogleGenomics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GoogleGenomics")

 

HTML Annotating Variants
HTML Plotting Alignments
HTML Reproducing Variant Annotation Results
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, Software, ThirdPartyClient
Version 1.2.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License Apache License (== 2.0) | file LICENSE
Depends R (>= 3.1.0), GenomicAlignments(>= 1.0.1), VariantAnnotation
Imports Biostrings, GenomeInfoDb, GenomicRanges, IRanges, httr, rjson, Rsamtools, S4Vectors
LinkingTo
Suggests BiocStyle, httpuv, knitr, rmarkdown, testthat, ggbio, ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://cloud.google.com/genomics/
BugReports https://github.com/Bioconductor/GoogleGenomics/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GoogleGenomics_1.2.0.tar.gz
Windows Binary GoogleGenomics_1.2.0.zip
Mac OS X 10.6 (Snow Leopard) GoogleGenomics_1.2.0.tgz
Mac OS X 10.9 (Mavericks) GoogleGenomics_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GoogleGenomics/tree/release-3.2
Package Short Url http://bioconductor.org/packages/GoogleGenomics/
Package Downloads Report Download Stats

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