To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneBreak")

In most cases, you don't need to download the package archive at all.

GeneBreak

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see GeneBreak.

Gene Break Detection

Bioconductor version: 3.2

Recurrent breakpoint gene detection on copy number aberration profiles.

Author: Evert van den Broek, Stef van Lieshout

Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>

Citation (from within R, enter citation("GeneBreak")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneBreak")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneBreak")

 

PDF GeneBreak
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH
Version 1.0.0
In Bioconductor since BioC 3.2 (R-3.2) (0.5 years)
License GPL-2
Depends R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports graphics, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/stefvanlieshout/GeneBreak
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GeneBreak_1.0.0.tar.gz
Windows Binary GeneBreak_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) GeneBreak_1.0.0.tgz
Mac OS X 10.9 (Mavericks) GeneBreak_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GeneBreak/tree/release-3.2
Package Short Url http://bioconductor.org/packages/GeneBreak/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center