To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EnrichedHeatmap")

In most cases, you don't need to download the package archive at all.

EnrichedHeatmap

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see EnrichedHeatmap.

Making Enriched Heatmaps

Bioconductor version: 3.2

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement Enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("EnrichedHeatmap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EnrichedHeatmap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnrichedHeatmap")

 

HTML Make Enriched Heatmaps
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, GenomeAnnotation, Sequencing, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.2 (R-3.2) (0.5 years)
License GPL (>= 2)
Depends R (>= 3.1.2), grid, ComplexHeatmap(>= 1.4.0), GenomicRanges, IRanges, locfit
Imports methods, matrixStats, stats
LinkingTo
Suggests testthat (>= 0.3), knitr, markdown, circlize (>= 0.3.1)
SystemRequirements
Enhances
URL https://github.com/jokergoo/EnrichedHeatmap
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source EnrichedHeatmap_1.0.0.tar.gz
Windows Binary EnrichedHeatmap_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) EnrichedHeatmap_1.0.0.tgz
Mac OS X 10.9 (Mavericks) EnrichedHeatmap_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/EnrichedHeatmap/tree/release-3.2
Package Short Url http://bioconductor.org/packages/EnrichedHeatmap/
Package Downloads Report Download Stats

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