To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ENCODExplorer")

In most cases, you don't need to download the package archive at all.

ENCODExplorer

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see ENCODExplorer.

A compilation of ENCODE metadata

Bioconductor version: 3.2

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Author: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Audrey Lemacon <lemacon.audrey at ulaval.ca> and Arnaud Droit <arnaud.droit at crchudequebec.ulaval.ca >

Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>

Citation (from within R, enter citation("ENCODExplorer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ENCODExplorer")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENCODExplorer")

 

HTML Data update
HTML Database model
HTML Introduction to ENCODExplorer
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software
Version 1.2.4
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License Artistic-2.0
Depends R (>= 3.2)
Imports tools, jsonlite, RSQLite
LinkingTo
Suggests RUnit, BiocGenerics, knitr, curl, httr
SystemRequirements
Enhances
URL
BugReports https://github.com/CharlesJB/ENCODExplorer/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ENCODExplorer_1.2.4.tar.gz
Windows Binary ENCODExplorer_1.2.4.zip
Mac OS X 10.6 (Snow Leopard) ENCODExplorer_1.2.0.tgz
Mac OS X 10.9 (Mavericks) ENCODExplorer_1.2.4.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ENCODExplorer/tree/release-3.2
Package Short Url http://bioconductor.org/packages/ENCODExplorer/
Package Downloads Report Download Stats

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