To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BRAIN")

In most cases, you don't need to download the package archive at all.

BRAIN

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see BRAIN.

Baffling Recursive Algorithm for Isotope distributioN calculations

Bioconductor version: 3.2

Package for calculating aggregated isotopic distribution and exact center-masses for chemical substances (in this version composed of C, H, N, O and S). This is an implementation of the BRAIN algorithm described in the paper by J. Claesen, P. Dittwald, T. Burzykowski and D. Valkenborg.

Author: Piotr Dittwald, with contributions of Dirk Valkenborg and Jurgen Claesen

Maintainer: Piotr Dittwald <piotr.dittwald at mimuw.edu.pl>

Citation (from within R, enter citation("BRAIN")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BRAIN")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BRAIN")

 

PDF BRAIN Usage
PDF   Reference Manual

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.16.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License GPL-2
Depends R (>= 2.8.1), PolynomF, Biostrings, lattice
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me cleaver, RforProteomics
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BRAIN_1.16.0.tar.gz
Windows Binary BRAIN_1.16.0.zip
Mac OS X 10.6 (Snow Leopard) BRAIN_1.16.0.tgz
Mac OS X 10.9 (Mavericks) BRAIN_1.16.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/BRAIN/tree/release-3.2
Package Short Url http://bioconductor.org/packages/BRAIN/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center