Quantifying and interpreting drivers of variation in complex gene expression studies


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Documentation for package ‘variancePartition’ version 1.0.7

Help Pages

calcVarPart Compute variance statistics
calcVarPart-method Compute variance statistics
colinearityScore Colinearity score
extractVarPart Extract variance statistics
fitExtractVarPartModel Fit linear (mixed) model, report variance fractions
fitExtractVarPartModel-method Fit linear (mixed) model, report variance fractions
fitVarPartModel Fit linear (mixed) model
fitVarPartModel-method Fit linear (mixed) model
geneCounts Simulation dataset for examples
geneExpr Simulation dataset for examples
getVarianceComponents Extract variance terms
ggColorHue Default colors for ggplot
info Simulation dataset for examples
plotPercentBars Bar plot of variance fractions
plotStratifyBy plotStratifyBy
plotVarPart Violin plot of variance fractions
plotVarPart-method Violin plot of variance fractions
residuals Residuals from model fit
residuals-method Residuals from model fit
sortCols Sort variance parition statistics
sortCols-method Sort variance parition statistics
varPartData Simulation dataset for examples