BetweenScreenPlot |
reproducibility plots |
BoxPlotShorth |
Boxplot with horizontal bars at the midpoint of the shorth |
cellHTS2df |
converts cellHTS objects to dataframes |
cortestmatrices |
Function to extract correlations and corresponding p-values from interaction matrix. |
data2graph |
Function to create .dot files for graph representation of data |
df2array |
function to do go from data frame to an array with values |
df2fitmatrix |
matrix for lmFit from dataframe |
df2lmFit |
lmFit from dataframe |
estmodel |
Function to do estimate the main effects from data using median, mean or shorth. |
faultyscreen |
faulty screen |
InteractGraph |
functions to visualize interactions as a graph |
interactiontable |
Returns a list of interactions with associated statistics. |
InteractLevelPlot |
function to visualize interactions as a levelplot |
key |
A key to data set screen1, contains (additional) information about the genes in the screen. |
lmmain |
main effect estimation |
MainFitPlot |
Diagnostic plot |
MAplot |
plot variation vs signal intensity |
PlotHeatmap |
Plot a heatmap of interactions |
Pplot |
Function to plot cumulative p-values |
repplots |
reproducibility plots |
rlmmain |
main effect estimation |
screen1_raw |
screen1 raw data |
screen2_raw |
screen2 raw data |
SDplot |
plot variation vs signal intensity |
signalplots |
plot variation vs signal intensity |
tt2matrix |
Extracting data from a toptable and format it to matrix |
updateDf |
updates dataframe after fitting of main estimates |
weightDf |
Function to indicate which data points should be involved in down stream analysis. |
WithinScreenPlot |
reproducibility plots |