Gene Set Enrichment For ChIP-seq Peak Data


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Documentation for package ‘chipenrich’ version 1.8.0

Help Pages

chipenrich Run ChIP-Enrich on a dataset of ChIP-seq peaks
plot_dist_to_tss Plot histogram of distance from peak to nearest TSS
plot_expected_peaks Plot the expected number of peaks given locus length for each gene.
plot_gene_coverage Plot gene locus length vs. gene coverage by a peak
plot_spline_length Plot probability of peak being assigned to a gene vs. gene length
supported_genesets List supported genesets
supported_genomes List supported genomes
supported_locusdefs List supported locus definitions
supported_methods List supported methods (enrichment tests)
supported_read_lengths List supported read lengths