STATegRa-package | STATegRa |
bioDist | bioDist |
bioDist-method | bioDist |
bioDistclass | bioDistclass |
bioDistFeature | bioDistFeature |
bioDistFeature-method | bioDistFeature |
bioDistFeaturePlot | bioDistFeaturePlot |
bioDistW | bioDistW |
bioDistW-method | bioDistW |
bioDistWPlot | bioDistWPlot |
bioDistWPlot-method | bioDistWPlot |
bioMap | bioMap |
biplotRes | Biplot of component analysis |
biplotRes-method | Biplot of component analysis |
Block1 | STATegRa data |
Block1.PCA | STATegRa data |
Block2 | STATegRa data |
Block2.PCA | STATegRa data |
caClass-class | caClass |
createOmicsExpressionSet | createOmicsExpressionSet |
createOmicsExpressionSet-method | createOmicsExpressionSet |
ed | STATegRa data |
ed.PCA | STATegRa data |
getInitialData | Retrieve initial data from caClass objects |
getInitialData-method | Retrieve initial data from caClass objects |
getLoadings | Retrieve component analysis loadings |
getLoadings-method | Retrieve component analysis loadings |
getMethodInfo | Retrieve information about component analysis method |
getMethodInfo-method | Retrieve information about component analysis method |
getPreprocessing | Retrieve information about preprocessing |
getPreprocessing-method | Retrieve information about preprocessing |
getScores | Retrieve component analysis scores |
getScores-method | Retrieve component analysis scores |
getVAF | Retrieve information abotut VAF |
getVAF-method | Retrieve information abotut VAF |
holistOmics | HolistOmics an application of NPC on omics datasets |
holistOmics-method | HolistOmics an application of NPC on omics datasets |
mapdata | STATegRa data |
modelSelection | Find optimal common and distinctive components |
modelSelection-method | Find optimal common and distinctive components |
omicsCompAnalysis | Components analysis for multiple objects |
omicsCompAnalysis-method | Components analysis for multiple objects |
PCA.selection | Select an optimal number of components using PCA |
PCA.selection-method | Select an optimal number of components using PCA |
plotRes | Plot component analysis results |
plotRes-method | Plot component analysis results |
plotVAF | Plot VAF (Variance Explained For) from Component Analysis |
plotVAF-method | Plot VAF (Variance Explained For) from Component Analysis |
selectCommonComps | Select common components in two data blocks |
selectCommonComps-method | Select common components in two data blocks |
STATegRa | STATegRa |
STATegRaUsersGuide | STATegRaUsersGuide |
STATegRa_data | STATegRa data |
STATegRa_data_TCGA_BRCA | STATegRa data |
TCGA_BRCA_Data | STATegRa data |