# PROspective Power Evaluation for RNAseq

## Documentation for package ‘PROPER’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

bottomly | Some existing RNA-seq and gene expression microarray data
cheung | Some existing RNA-seq and gene expression microarray data
comparePower | Compute the power-related quantities from simulation results
estParam | estimate simulation parameters from a count table
GE.human | Some existing RNA-seq and gene expression microarray data
gilad | Some existing RNA-seq and gene expression microarray data
maqc | Some existing RNA-seq and gene expression microarray data
param | Some existing RNA-seq and gene expression microarray data
pbmc | Some existing RNA-seq and gene expression microarray data
plotAll | Plot the stratified curves for power-related quantities
plotFDcost | Plot the stratified curves for power-related quantities
plotFDR | Plot the stratified curves for power-related quantities
plotPower | Plot the stratified curves for power-related quantities
plotPowerAlpha | Plot the stratified curves for power-related quantities
plotPowerFD | Plot the stratified curves for power-related quantities
plotPowerHist | Plot the histogram of power
plotPowerTD | Plot the stratified curves for power-related quantities
power.seqDepth | Estimate the marginal power under different sequencing depth
RNAseq.SimOptions.2grp | Set up options for simulating RNA-seq data in two-group comparison.
runSims | Run a number of RNA-seq simulations and DE detections
simRNAseq | Simulate RNA-seq count data
summaryPower | Generate a summary table for power analysis result