Package: MethylAid
Type: Package
Title: Visual and interactive quality control of large Illumina 450k
        data sets
Version: 1.4.0
Date: 2015-04-12
Author: Maarten van Iterson, Elmar. Tobi, Roderick Slieker, 
        Wouter den Hollander, Rene Luijk and Bas Heijmans
Maintainer: M. van Iterson <m.van_iterson@lumc.nl>
Description: A visual and interactive web application using RStudio's
        shiny package. Bad quality samples are detected using
        sample-dependent and sample-independent controls present on the
        array and user adjustable thresholds. In depth exploration of
        bad quality samples can be performed using several interactive
        diagnostic plots of the quality control probes present on the
        array. Furthermore, the impact of any batch effect provided by
        the user can be explored.
URL: http://shiny.bioexp.nl/MethylAid
License: GPL (>= 2)
VignetteBuilder: knitr
biocViews: DNAMethylation, MethylationArray, Microarray, TwoChannel,
        QualityControl, BatchEffect, Visualization, GUI
Depends: R (>= 3.0)
Imports: Biobase, BiocParallel, BiocGenerics,
        FDb.InfiniumMethylation.hg19, ggplot2, grid, gridBase, hexbin,
        IlluminaHumanMethylation450kmanifest, matrixStats, minfi,
        methods, RColorBrewer, shiny
Suggests: BiocStyle, knitr, MethylAidData, minfiData, RUnit
NeedsCompilation: no
Packaged: 2015-10-14 03:57:34 UTC; biocbuild
Built: R 3.2.2; ; 2015-10-14 14:27:13 UTC; unix
