MMDiff-package |
Statistical Testing for ChIP-Seq data sets |
Cfp1Dists |
Example DBA object used to illustrate usage of the MMDiff package |
Cfp1Profiles |
Example DBA object used to illustrate usage of the MMDiff package |
compHistDists |
Compute distances between pairs of histograms |
detPeakPvals |
Compute p-values for each peak based on distances between histograms |
findOutliers |
Find peaks with extreme count values |
getNormFactors |
Determine Normalisation factors |
getPeakProfiles |
Add histograms (binned read enrichment profiles) to an existing DBA object |
MMDiff |
Statistical Testing for ChIP-Seq data sets |
plotHistDists |
plot MMD distances |
plotPeak |
plot read enrichment profiles at a specific peak for all specified samples. |