DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles


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Documentation for package ‘DMRforPairs’ version 1.6.0

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DMRforPairs-package DMRforPairs package
calc_stats CALCULATE DESCRIPTIVE AND TEST STATISTICS
CL.methy METHYLATION DATA OF 4 CELL LINES (CHR 7)
DMRforPairs WRAPPER FOR THE DMRforPairs ANALSYSIS
example_output_DMRforPairs EXAMPLE OF DMRforPairs RESULTS
export_data COMPLETE EXPORT AND VISUALIZATION OF DMRforPairs RESULTS
merge_classes MERGE ILLUMINA PROBE CLASSES
plot_annotate_custom_region PLOT METHYLATION OF A CUSTOM GENOMIC REGION
plot_annotate_gene PLOT METHYLATION VALUES AROUND A GENE
plot_annotate_probes PLOT METHYLATION+ANNOTATE A SET OF PROBES
plot_annotate_region PLOT METHYLATION AND ANNOTATE REGION
regionfinder IDENTIFICATION OF PROBE DENSE REGIONS
testregion METHYLATION DIFFERENECE & TESTING FOR 1 REGIONID
tune_parameters TUNE MIN_DISTANCE AND MIN_N PARAMETERS