Transform public data resources into Bioconductor Data Structures


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Documentation for package ‘AnnotationHubData’ version 1.0.2

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AnnotationHubRecipes-package Transform public data resources into Bioconductor Data Structures ~~ package title ~~
ahmToJson Class '"AnnotationHubMetadata"' and methods
amazon Upload a file to Amazon S3
AnnotationHubMetadata Class '"AnnotationHubMetadata"' and methods
AnnotationHubMetadata-class Class '"AnnotationHubMetadata"' and methods
AnnotationHubMetadataFromJson Class '"AnnotationHubMetadata"' and methods
AnnotationHubRecipes Transform public data resources into Bioconductor Data Structures ~~ package title ~~
annotationHubRoot Class 'ImportPreparer' and generic 'newResources'
AWS Upload a file to Amazon S3
constructAnnotationHubMetadataFromSourceFilePath Class '"AnnotationHubMetadata"' and methods
constructMetadataFromJsonPath Class '"AnnotationHubMetadata"' and methods
constructSeqInfo Class '"AnnotationHubMetadata"' and methods
dbSNPVCFImportPreparer Class 'ImportPreparer' and generic 'newResources'
dbSNPVCFImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
deleteResources Class '"AnnotationHubMetadata"' and methods
EncodeImportPreparer Class 'ImportPreparer' and generic 'newResources'
EncodeImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
EnsemblFastaImportPreparer Class 'ImportPreparer' and generic 'newResources'
EnsemblFastaImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
ensemblFastaToFaFile ensemblFastaToFaFile
EnsemblGtfImportPreparer Class 'ImportPreparer' and generic 'newResources'
EnsemblGtfImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
flog flog
getImportPreparerClasses Class '"AnnotationHubMetadata"' and methods
Grasp2ImportPreparer Class 'ImportPreparer' and generic 'newResources'
Grasp2ImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
HaemCodeImportPreparer Class 'ImportPreparer' and generic 'newResources'
HaemCodeImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
ImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
Inparanoid8ImportPreparer Class 'ImportPreparer' and generic 'newResources'
Inparanoid8ImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
inputFiles Class '"AnnotationHubMetadata"' and methods
inputFiles-method Class '"AnnotationHubMetadata"' and methods
jsonPath Class '"AnnotationHubMetadata"' and methods
makeAnnotationHubResource Class '"AnnotationHubMetadata"' and methods
metadata Class '"AnnotationHubMetadata"' and methods
metadata-method Class '"AnnotationHubMetadata"' and methods
metadata<- Class '"AnnotationHubMetadata"' and methods
metadata<--method Class '"AnnotationHubMetadata"' and methods
metadataList Class 'ImportPreparer' and generic 'newResources'
metadataTable Class 'ImportPreparer' and generic 'newResources'
NCBIImportPreparer Class 'ImportPreparer' and generic 'newResources'
NCBIImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
newResources Class 'ImportPreparer' and generic 'newResources'
newResources-method Class 'ImportPreparer' and generic 'newResources'
outputFile Class '"AnnotationHubMetadata"' and methods
outputFile-method Class '"AnnotationHubMetadata"' and methods
postProcessMetadata Class '"AnnotationHubMetadata"' and methods
recipeName Class '"AnnotationHubMetadata"' and methods
recipeName-method Class '"AnnotationHubMetadata"' and methods
RefNetImportPreparer Class 'ImportPreparer' and generic 'newResources'
RefNetImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
run Class '"AnnotationHubMetadata"' and methods
run-method Class '"AnnotationHubMetadata"' and methods
S3 Upload a file to Amazon S3
show Class '"AnnotationHubMetadata"' and methods
show-method Class '"AnnotationHubMetadata"' and methods
show-method Class 'ImportPreparer' and generic 'newResources'
sourceUrls Class 'ImportPreparer' and generic 'newResources'
toJson Class '"AnnotationHubMetadata"' and methods
tracksToUpdate Class '"AnnotationHubMetadata"' and methods
UCSCChainPreparer Class 'ImportPreparer' and generic 'newResources'
UCSCChainPreparer-class Class 'ImportPreparer' and generic 'newResources'
UCSCTrackImportPreparer Class 'ImportPreparer' and generic 'newResources'
UCSCTrackImportPreparer-class Class 'ImportPreparer' and generic 'newResources'
updateResources Class '"AnnotationHubMetadata"' and methods
upload_to_S3 Upload a file to Amazon S3