Platform for integrative analysis of omics data


[Up] [Top]

Documentation for package ‘piano’ version 1.10.0

Help Pages

piano-package Piano - Platform for Integrative ANalysis of Omics data
consensusHeatmap Heatmap of top consensus gene sets
consensusScores Top consensus gene sets and boxplot
diffExp Perform differential expression analysis
extractFactors Extracts 'ArrayData' factors
geneSetSummary Gene set summary
GSAheatmap Heatmap of top significant gene sets
GSAsummaryTable Gene set analysis summary table
gsa_input Random input data for gene set analysis
gsa_results Gene set analysis result data
loadGSC Load a gene set collection
loadMAdata Load and preprocess microarray data
networkPlot Gene set network plot
piano Piano - Platform for Integrative ANalysis of Omics data
polarPlot Polar plot
runGSA Gene set analysis
runGSAhyper Gene set analysis with Fisher's exact test
runQC Run quality control
writeFilesForKiwi Write files for Kiwi