ncdfFlow-package | ncdfFlow: A package that provides CDF storage based flow cytometry data analysis. |
as.flowSet | convert from a 'ncdfFlowSet' to a 'flowSet' |
clone.ncdfFlowSet | Clone a ncdfFlowSet |
colnames-method | Accessors compatible with those for 'flowSet' |
colnames<- | Accessors compatible with those for 'flowSet' |
colnames<--method | Accessors compatible with those for 'flowSet' |
compensate-method | Accessors compatible with those for 'flowSet' |
densityplot-method | flowViz plot methods. |
filter-method | Accessors compatible with those for 'flowSet' |
getFileName | get the cdf file name associated with ncdfFlowSet object |
getIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
getIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
histogram-method | flowViz plot methods. |
initIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
initIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
lapply-method | lapply method for ncdfFlowList |
length-method | Accessors compatible with those for 'flowSet' |
load_ncfs | save/load a ncdfFlowSet object to/from disk. |
ncdfFlow | ncdfFlow: A package that provides CDF storage based flow cytometry data analysis. |
ncdfFlowList | a class that stores multiple ncdfFlowSet objects |
ncdfFlowList-class | a class that stores multiple ncdfFlowSet objects |
ncdfFlowSet | create ncdfFlowSet from flowSet |
ncdfFlowSet-class | a class for storing flow cytometry raw data in HDF5 format |
ncdfFlowSet-method | create ncdfFlowSet from flowSet |
ncfsApply | apply method for ncdfFlowSet (for internal use) |
ncfsApply-method | apply method for ncdfFlowSet (for internal use) |
pData-method | Accessors compatible with those for 'flowSet' |
pData<--method | Accessors compatible with those for 'flowSet' |
phenoData-method | Accessors compatible with those for 'flowSet' |
phenoData<--method | Accessors compatible with those for 'flowSet' |
rbind2-method | combine multiple ncdfFlowSet objects into one |
read.ncdfFlowSet | create ncdfFlowSet from FCS files |
read.ncdfFlowset | create ncdfFlowSet from FCS files |
replacement method for ncdfFlowSet | write the flow data from a 'flowFrame' to 'ncdfFlowSet' |
sampleNames-method | Accessors compatible with those for 'flowSet' |
sampleNames<- | Accessors compatible with those for 'flowSet' |
sampleNames<--method | Accessors compatible with those for 'flowSet' |
save_ncfs | save/load a ncdfFlowSet object to/from disk. |
show | a class for storing flow cytometry raw data in HDF5 format |
show-method | a class that stores multiple ncdfFlowSet objects |
show-method | a class for storing flow cytometry raw data in HDF5 format |
split-method | split a 'ncdfFlowSet' object. |
Subset-method | subset a ncdfFlowSet by filter |
subset.ncdfFlowList | subset the ncdfFlowSet/ncdfFlowList based on 'pData' |
subset.ncdfFlowSet | subset the ncdfFlowSet/ncdfFlowList based on 'pData' |
transform-method | Accessors compatible with those for 'flowSet' |
unlink-method | delete the cdf file associated with the ncdfFlowSet object |
updateIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
updateIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
xyplot-method | flowViz plot methods. |
[-method | subsetting by sampleNames,channels(not for events) methods |
[[-method | extract a 'flowFrame' object from 'ncdfFlowSet' |
[[<--method | write the flow data from a 'flowFrame' to 'ncdfFlowSet' |