annotate | Annotating metagenome data with taxonomic information |
annotate-method | Annotating metagenome data with taxonomic information |
get_demoMgDb | Example MgDb-class object |
metagenomeAnnotation-class | metagenomeAnnotation-class object |
MgDb | Metagenome Database class |
mgdb | Metagenome Database class |
MgDb-class | Metagenome Database class |
mgQuery | Example ShortRead 16S experiment dataset |
msd16s_metagenomeAnnotation | Example metagenomeAnnotation object |
msd16s_query_df | Example Query Data Frame |
select | Querying MgDb objects |
select-method | Querying MgDb objects |
show-method | Display summary of MgDb-class object |
split_by | Split metagenomeAnnotation Object by Taxa |
split_by-method | Split metagenomeAnnotation Object by Taxa |
taxa_columns | Column names for MgDb taxonomy slot object |
taxa_columns-method | Column names for MgDb taxonomy slot object |
taxa_keys | Taxonomy values for a given keytype |
taxa_keys-method | Taxonomy values for a given keytype |
taxa_keytypes | Column names for MgDb taxonomy slot object |
taxa_keytypes-method | Column names for MgDb taxonomy slot object |