Exploration of marker-gene sequence taxonomic annotations


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Documentation for package ‘metagenomeFeatures’ version 1.0.0

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annotate Annotating metagenome data with taxonomic information
annotate-method Annotating metagenome data with taxonomic information
get_demoMgDb Example MgDb-class object
metagenomeAnnotation-class metagenomeAnnotation-class object
MgDb Metagenome Database class
mgdb Metagenome Database class
MgDb-class Metagenome Database class
mgQuery Example ShortRead 16S experiment dataset
msd16s_metagenomeAnnotation Example metagenomeAnnotation object
msd16s_query_df Example Query Data Frame
select Querying MgDb objects
select-method Querying MgDb objects
show-method Display summary of MgDb-class object
split_by Split metagenomeAnnotation Object by Taxa
split_by-method Split metagenomeAnnotation Object by Taxa
taxa_columns Column names for MgDb taxonomy slot object
taxa_columns-method Column names for MgDb taxonomy slot object
taxa_keys Taxonomy values for a given keytype
taxa_keys-method Taxonomy values for a given keytype
taxa_keytypes Column names for MgDb taxonomy slot object
taxa_keytypes-method Column names for MgDb taxonomy slot object