R Interface to epiviz web app


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Documentation for package ‘epivizr’ version 1.8.0

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class:EpivizBlockData 'EpivizBlockData' objects
class:EpivizBpData 'EpivizBpData' objects
class:EpivizChart 'EpivizChart' objects
class:EpivizData 'EpivizData' objects
class:EpivizDataCache Virtual class for data cache used by Epiviz.
class:EpivizDevice 'EpivizDevice' objects
class:EpivizDeviceMgr 'EpivizDeviceMgr' objects
class:EpivizFeatureData 'EpivizFeatureData' objects
class:EpivizGeneInfoData-class 'EpivizGeneInfoData' objects
class:EpivizServer EpivizServer objects
class:EpivizTrackData 'EpivizTrackData' objects
class:EpivizWigCache Cache for BigWig files
class:EpivizWigData Container for data read from external BigWig files
class:IndexedArray Indexed array
class:Queue A Queue
colonSE Example exon-level RNAseq data from TCGA project for epivizr.
colon_blocks Example methylation data for epivizr vignette
colon_curves Example methylation data for epivizr vignette
EpivizBlockData-class 'EpivizBlockData' objects
EpivizBpData-class 'EpivizBpData' objects
EpivizChart-class 'EpivizChart' objects
EpivizData-class 'EpivizData' objects
EpivizDataCache-class Virtual class for data cache used by Epiviz.
EpivizDevice-class 'EpivizDevice' objects
EpivizDeviceMgr 'EpivizDeviceMgr' objects
EpivizDeviceMgr-class 'EpivizDeviceMgr' objects
EpivizFeatureData-class 'EpivizFeatureData' objects
EpivizGeneInfoData-class 'EpivizGeneInfoData' objects
EpivizServer-class EpivizServer objects
EpivizTrackData-class 'EpivizTrackData' objects
EpivizWigCache-class Cache for BigWig files
EpivizWigData-class Container for data read from external BigWig files
IndexedArray-class Indexed array
makeGeneTrackAnnotation Create a gene annotation object to use as gene track on the epiviz UI.
Queue-class A Queue
register-method Encapsulate data object in Epiviz
register-methods Encapsulate data object in Epiviz
startEpiviz Start the epiviz interface
startStandalone Start the standalone epiviz interface
tcga_colon_example Example methylation data for epivizr vignette
tcga_colon_expression Example exon-level RNAseq data from TCGA project for epivizr.