chipenrich | Run ChIP-Enrich on a dataset of ChIP-seq peaks |
plot_dist_to_tss | Plot histogram of distance from peak to nearest TSS |
plot_expected_peaks | Plot the expected number of peaks given locus length for each gene. |
plot_gene_coverage | Plot gene locus length vs. gene coverage by a peak |
plot_spline_length | Plot probability of peak being assigned to a gene vs. gene length |
supported_genesets | List supported genesets |
supported_genomes | List supported genomes |
supported_locusdefs | List supported locus definitions |
supported_methods | List supported methods (enrichment tests) |
supported_read_lengths | List supported read lengths |