Extract read count signals from bam files


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Documentation for package ‘bamsignals’ version 1.2.0

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bamsignals-package Efficient counting of reads in a bam files
alignSignals Container for count signals
alignSignals-method Container for count signals
as.list Container for count signals
as.list-method Container for count signals
as.list.CountSignals Converts the container to a list 'l' such that 'l[[i]]' is the i-th signal.
bamCount Functions for extracting count signals from a bam file.
bamCount-method Functions for extracting count signals from a bam file.
bamCoverage Functions for extracting count signals from a bam file.
bamCoverage-method Functions for extracting count signals from a bam file.
bamProfile Functions for extracting count signals from a bam file.
bamProfile-method Functions for extracting count signals from a bam file.
bamsignals Efficient counting of reads in a bam files
bamsignals-methods Functions for extracting count signals from a bam file.
CountSignals Container for count signals
CountSignals-class Container for count signals
length Container for count signals
length-method Container for count signals
width Container for count signals
width-method Container for count signals
[-method Container for count signals