TarSeqQC-package	TarSeqQC-package
#	TargetExperiment-statistics
addStatSummSheet	TargetExperiment-buildReport
addStatSummSheet,TargetExperiment-method	TargetExperiment-buildReport
addStatSummSheet-methods	TargetExperiment-buildReport
ampliPanel	ampliPanel
buildFeaturePanel	TargetExperiment-buildFeaturePanel
buildFeaturePanel,TargetExperiment-method	TargetExperiment-buildFeaturePanel
buildFeaturePanel-methods	TargetExperiment-buildFeaturePanel
buildReport	TargetExperiment-buildReport
buildReport,TargetExperiment-method	TargetExperiment-buildReport
buildReport-methods	TargetExperiment-buildReport
getAttribute	TargetExperiment-getters
getAttribute,TargetExperiment-method	TargetExperiment-getters
getAttribute-methods	TargetExperiment-getters
getBamFile	TargetExperiment-getters
getBamFile,TargetExperiment-method	TargetExperiment-getters
getBamFile-methods	TargetExperiment-getters
getBedFile	TargetExperiment-getters
getBedFile,TargetExperiment-method	TargetExperiment-getters
getBedFile-methods	TargetExperiment-getters
getFastaFile	TargetExperiment-getters
getFastaFile,TargetExperiment-method	TargetExperiment-getters
getFastaFile-methods	TargetExperiment-getters
getFeature	TargetExperiment-getters
getFeature,TargetExperiment-method	TargetExperiment-getters
getFeature-methods	TargetExperiment-getters
getFeaturePanel	TargetExperiment-getters
getFeaturePanel,TargetExperiment-method	TargetExperiment-getters
getFeaturePanel-methods	TargetExperiment-getters
getGenePanel	TargetExperiment-getters
getGenePanel,TargetExperiment-method	TargetExperiment-getters
getGenePanel-methods	TargetExperiment-getters
getLowCtsFeatures	TargetExperiment-getters
getLowCtsFeatures,TargetExperiment-method	TargetExperiment-getters
getLowCtsFeatures-methods	TargetExperiment-getters
getPileupP	TargetExperiment-getters
getPileupP,TargetExperiment-method	TargetExperiment-getters
getPileupP-methods	TargetExperiment-getters
getRegion	TargetExperiment-getters
getRegion,TargetExperiment-method	TargetExperiment-getters
getRegion-methods	TargetExperiment-getters
getScanBamP	TargetExperiment-getters
getScanBamP,TargetExperiment-method	TargetExperiment-getters
getScanBamP-methods	TargetExperiment-getters
ggplotColours	TargetExperiment-buildReport
ggplotColours,TargetExperiment-method	TargetExperiment-buildReport
ggplotColours-methods	TargetExperiment-buildReport
initialize	TargetExperiment-initialize
initialize,TargetExperiment-method	TargetExperiment-initialize
Object	TargetExperiment-statistics
pileupCounts	pileupCounts
pileupCounts-methods	pileupCounts
plot	TargetExperiment-plot
plot,TargetExperiment,ANY-method	TargetExperiment-plot
plotAttrExpl	TargetExperiment-plotAttrExpl
plotAttrExpl,TargetExperiment-method	TargetExperiment-plotAttrExpl
plotAttrExpl-methods	TargetExperiment-plotAttrExpl
plotFeatPerform	TargetExperiment-plotFeatPerform
plotFeatPerform,TargetExperiment-method	TargetExperiment-plotFeatPerform
plotFeatPerform-methods	TargetExperiment-plotFeatPerform
plotFeature	TargetExperiment-plotFeature
plotFeature,TargetExperiment-method	TargetExperiment-plotFeature
plotFeature-methods	TargetExperiment-plotFeature
plotGeneAttrPerFeat	TargetExperiment-plotGeneAttrPerFeat
plotGeneAttrPerFeat,TargetExperiment-method	TargetExperiment-plotGeneAttrPerFeat
plotGeneAttrPerFeat-methods	TargetExperiment-plotGeneAttrPerFeat
plotNtdPercentage	TargetExperiment-plotNtdPercentage
plotNtdPercentage,TargetExperiment-method	TargetExperiment-plotNtdPercentage
plotNtdPercentage-methods	TargetExperiment-plotNtdPercentage
plotRegion	TargetExperiment-plotRegion
plotRegion,TargetExperiment-method	TargetExperiment-plotRegion
plotRegion-methods	TargetExperiment-plotRegion
print	TargetExperiment-print
print,TargetExperiment-method	TargetExperiment-print
setAttribute<-	TargetExperiment-setters
setAttribute<-,TargetExperiment,character-method	TargetExperiment-setters
setAttribute<--methods	TargetExperiment-setters
setBamFile<-	TargetExperiment-setters
setBamFile<-,TargetExperiment,character-method	TargetExperiment-setters
setBedFile<-	TargetExperiment-setters
setBedFile<-,TargetExperiment,character-method	TargetExperiment-setters
setBedFile<--methods	TargetExperiment-setters
setFastaFile<-	TargetExperiment-setters
setFastaFile<-,TargetExperiment,character-method	TargetExperiment-setters
setFastaFile<--methods	TargetExperiment-setters
setFeature<-	TargetExperiment-setters
setFeature<-,TargetExperiment,character-method	TargetExperiment-setters
setFeature<--methods	TargetExperiment-setters
setFeaturePanel<-	TargetExperiment-setters
setFeaturePanel<-,TargetExperiment,GRanges-method	TargetExperiment-setters
setFeaturePanel<--methods	TargetExperiment-setters
setGenePanel<-	TargetExperiment-setters
setGenePanel<-,TargetExperiment,GRanges-method	TargetExperiment-setters
setGenePanel<--methods	TargetExperiment-setters
setPileupP<-	TargetExperiment-setters
setPileupP<-,TargetExperiment,PileupParam-method	TargetExperiment-setters
setPileupP<--methods	TargetExperiment-setters
setScanBamP<-	TargetExperiment-setters
setScanBamP<-,TargetExperiment,ScanBamParam-method	TargetExperiment-setters
setScanBamP<--methods	TargetExperiment-setters
setsetBamFile<-	TargetExperiment-setters
setsetBamFile<--methods	TargetExperiment-setters
show	TargetExperiment-show
show,TargetExperiment-method	TargetExperiment-show
summarizePanel	TargetExperiment-summarizePanel
summarizePanel,TargetExperiment-method	TargetExperiment-summarizePanel
summarizePanel-methods	TargetExperiment-summarizePanel
summary	TargetExperiment-statistics
summary(ampliPanel)	TargetExperiment-statistics
summary,TargetExperiment-method	TargetExperiment-statistics
summaryFeatureLev	TargetExperiment-statistics
summaryFeatureLev,TargetExperiment-method	TargetExperiment-statistics
summaryFeatureLev-methods	TargetExperiment-statistics
summaryGeneLev	TargetExperiment-statistics
summaryGeneLev,TargetExperiment-method	TargetExperiment-statistics
summaryGeneLev-methods	TargetExperiment-statistics
summaryIntervals	TargetExperiment-statistics
summaryIntervals,TargetExperiment-method	TargetExperiment-statistics
summaryIntervals-methods	TargetExperiment-statistics
TargetExperiment	TargetExperiment-constructor
TargetExperiment-class	TargetExperiment-class
TargetExperiment-methods	TargetExperiment-constructor
