Package: TarSeqQC
Type: Package
Version: 1.0.0
Date: 2015-09-16
Title: TARgeted SEQuencing Experiment Quality Control
Author: Gabriela A. Merino, Cristobal Fresno and Elmer A. Fernandez
Maintainer: Gabriela Merino <gmerino@bdmg.com.ar>
Description: The package allows the representation of targeted
        experiment in R. This is based on current packages and
        incorporates functions to do a quality control over this kind
        of experiments and a fast exploration of the sequenced regions.
        An xlsx file is generated as output.
URL: http://www.bdmg.com.ar
License: GPL (>=2)
Depends: R (>= 3.2.1), methods, GenomicRanges, Rsamtools (>= 1.20.4),
        ggplot2, plyr, openxlsx
Imports: S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb,
        BiocParallel, cowplot
Suggests: RUnit
Collate: 'TarSeqQC-package.R' 'TargetExperiment.R'
        'TargetExperiment-ampliPanel.R' 'TargetExperiment-getters.R'
        'TargetExperiment-setters.R' 'TargetExperiment-show.R'
        'TargetExperiment-print.R' 'TargetExperiment-pileupCounts.R'
        'TargetExperiment-buildFeaturePanel.R'
        'TargetExperiment-summarizePanel.R'
        'TargetExperiment-initialize.R'
        'TargetExperiment-constructor.R'
        'TargetExperiment-statistics.R' 'TargetExperiment-plot.R'
        'TargetExperiment-ggplotColours.R'
        'TargetExperiment-addStatSummSheet.R'
        'TargetExperiment-buildReport.R'
        'TargetExperiment-plotAttrExpl.R'
        'TargetExperiment-plotFeatPerform.R'
        'TargetExperiment-plotRegion.R'
        'TargetExperiment-plotFeature.R'
        'TargetExperiment-plotGeneAttrPerFeat.R'
        'TargetExperiment-plotNtdPercentage.R'
biocViews: Software, Sequencing, TargetedResequencing, QualityControl,
        Visualization, Coverage, Alignment, DataImport
NeedsCompilation: no
Packaged: 2015-10-15 04:11:52 UTC; biocbuild
Built: R 3.2.2; ; 2015-10-15 17:53:32 UTC; unix
