SigCheck-package |
Check a gene signature's survival and/or classification performance against random signatures, known signatures, and permuted data/metadata. |
knownSignatures |
Previously identified gene signatures for use in 'sigCheckKnown' |
nkiResults |
Precomputed list of results for a call to 'sigCheck' using the 'breastCancerNKI' dataset. |
resultsNKI |
Previously identified gene signatures for use in 'sigCheckKnown' |
SigCheck |
Check a gene signature's survival and/or classification performance against random signatures, known signatures, and permuted data/metadata. |
sigCheck |
Create a 'SigCheckObject' and establish baseline performance. |
sigCheckAll |
Run a default set of checks on a gene signature. |
sigCheckKnown |
Check signature performance against a panel of known signatures. |
SigCheckObject |
Class '"SigCheckObject"' |
SigCheckObject-class |
Class '"SigCheckObject"' |
sigCheckPermuted |
Check signature performance against performance on randomly permuted data. |
sigCheckPlot |
Plot results of a signature check or set of checks |
sigCheckRandom |
Check signature performance against signatures composed of randomly selected features |