R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data.


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Documentation for package ‘Rcade’ version 1.12.0

Help Pages

constructRcadeTable Construct Rcade Table
countReads Count Reads
defineBins Define Bins
diffCountsBaySeq Differential Counts wrapper - BaySeq
exportRcade exportRcade and ...
exportRcade-method exportRcade and ...
exportRcade-methods exportRcade and ...
getChIP Rcade Class
getChIP-method Rcade Class
getChIP<- Rcade Class
getChIP<--method Rcade Class
getDE Rcade Class
getDE-method Rcade Class
getDE<- Rcade Class
getDE<--method Rcade Class
getRcade Rcade Class
getRcade-method Rcade Class
getRcade<- Rcade Class
getRcade<--method Rcade Class
plotBB Rcade Class
plotBB-method Rcade Class
plotBBB Rcade Class
plotBBB-method Rcade Class
plotMM Rcade Class
plotMM-method Rcade Class
plotPCA Rcade Class
plotPCA-method Rcade Class
Rcade-class Rcade Class
RcadeAnalysis Rcade Analysis
RcadeSTAT1 Rcade object - STAT1 data
RcadeTrack-class RcadeTrack Class