aa |
The 'Proteins' Class for Proteomics Data And Meta-Data |
aa-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
acols |
The 'Proteins' Class for Proteomics Data And Meta-Data |
addIdentificationData-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
ametadata |
The 'Proteins' Class for Proteomics Data And Meta-Data |
ametadata-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
avarLabels |
The 'Proteins' Class for Proteomics Data And Meta-Data |
avarLabels-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
calculateHeavyLabels |
Calculate heavy labeled peptides |
class:Proteins |
The 'Proteins' Class for Proteomics Data And Meta-Data |
cleave-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
etrid2grl |
From a transcript identifier to 'GRanges' object |
isCleaved |
The 'Proteins' Class for Proteomics Data And Meta-Data |
isForward |
Are all the ranges on the same strand |
isReverse |
Are all the ranges on the same strand |
length-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
mapToGenome |
Map range coordinates between proteins and genome space |
mapToGenome-method |
Map range coordinates between proteins and genome space |
mapToGenome-methods |
Map range coordinates between proteins and genome space |
metadata-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
metadata<--method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
p |
An 'Proteins' object and its MSMS spectra |
pcols |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pfeatures |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pfeatures-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pfilter |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pfilter-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
plot-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
plotAsAnnotationTrack |
Plot gene region and annotation tracks |
plotAsGeneRegionTrack |
Plot gene region and annotation tracks |
pmapToGenome |
Map range coordinates between proteins and genome space |
pmapToGenome-method |
Map range coordinates between proteins and genome space |
pmapToGenome-methods |
Map range coordinates between proteins and genome space |
pmetadata |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pmetadata-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pms |
An 'Proteins' object and its MSMS spectra |
Pparams |
Class '"Pparams"' |
Pparams-class |
Class '"Pparams"' |
pranges |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pranges-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
proteinCoding |
Only keep protein coding ranges |
proteinCoding-method |
Only keep protein coding ranges |
proteinCoding-methods |
Only keep protein coding ranges |
proteinCoverage |
The 'Proteins' Class for Proteomics Data And Meta-Data |
Proteins |
The 'Proteins' Class for Proteomics Data And Meta-Data |
Proteins-class |
The 'Proteins' Class for Proteomics Data And Meta-Data |
Proteins-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
proteotypic |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pvarLabels |
The 'Proteins' Class for Proteomics Data And Meta-Data |
pvarLabels-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
rmEmptyRanges |
The 'Proteins' Class for Proteomics Data And Meta-Data |
seqnames-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
show-method |
Class '"Pparams"' |
show-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
[-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |
[[-method |
The 'Proteins' Class for Proteomics Data And Meta-Data |