addReference | Add reference species |
addReference-method | Class '"Path2PPI"' |
ai | Data set to predict autophagy induction in _Podospora anserina_ |
getHybridNetwork | Get hybrid network of the predicted PPI |
getHybridNetwork-method | Class '"Path2PPI"' |
getPPI | Get predicted PPI |
getPPI-method | Class '"Path2PPI"' |
homologyScore | Computes homology scores |
human.ai.irefindex | Data set to predict autophagy induction in _Podospora anserina_ |
human.ai.proteins | Data set to predict autophagy induction in _Podospora anserina_ |
initialize-method | Class '"Path2PPI"' |
pa2human.ai.homologs | Data set to predict autophagy induction in _Podospora anserina_ |
pa2yeast.ai.homologs | Data set to predict autophagy induction in _Podospora anserina_ |
Path2PPI | Class '"Path2PPI"' |
Path2PPI-class | Class '"Path2PPI"' |
plot.Path2PPI | Plots the predicted PPI |
plot.Path2PPI-method | Class '"Path2PPI"' |
predictPPI | Prediction of the PPI |
predictPPI-method | Class '"Path2PPI"' |
removeReference | Remove reference species |
removeReference-method | Class '"Path2PPI"' |
show-method | Class '"Path2PPI"' |
showInteraction | Information about an interaction |
showInteraction-method | Class '"Path2PPI"' |
showInteraction-methods | Information about an interaction |
showReferences | Information about reference species |
showReferences-method | Class '"Path2PPI"' |
yeast.ai.irefindex | Data set to predict autophagy induction in _Podospora anserina_ |
yeast.ai.proteins | Data set to predict autophagy induction in _Podospora anserina_ |