FEM-package |
Identification of interactome hotspots of differential promoter DNA methylation and differential expression |
DoEpiMod |
Identifies differential DNA methylation network hotspots. |
DoExpMod |
Identifies differential mRNA expression network hotspots. |
DoFEMbi |
Identifies interactome hotspots of differential promoter DNAm methylation and differential mRNA expression. |
DoIntEpi450k |
Integrates statistics of differential DNA methylation for a specified contrast with a network adjacency matrix. |
DoIntExp |
Integrates statistics of differential expression for a specified contrast with a network adjacency matrix. |
DoIntFEM450k |
Integrates statistics of differential DNA methylation and differential expression for a specified contrast with a network adjacency matrix. |
FEM |
Identification of interactome hotspots of differential promoter DNA methylation and differential expression |
FemModShow |
Generates a figure showing the inferred FEM module(s) |
GenStatM |
Generation of differential DNA methylation statistics |
GenStatR |
Generation of differential expression statistics |
probe450kfemanno |
Processed annotation of Illumina 450k probes for use in the FEM algorithm. |
Realdata |
A dataset object derived from real DNA methylation and gene expression data from normal endometrial and endometrial cancer tissue |
Toydata |
Artificial data set. |