Identification of Functional Epigenetic Modules


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Documentation for package ‘FEM’ version 2.6.0

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FEM-package Identification of interactome hotspots of differential promoter DNA methylation and differential expression
DoEpiMod Identifies differential DNA methylation network hotspots.
DoExpMod Identifies differential mRNA expression network hotspots.
DoFEMbi Identifies interactome hotspots of differential promoter DNAm methylation and differential mRNA expression.
DoIntEpi450k Integrates statistics of differential DNA methylation for a specified contrast with a network adjacency matrix.
DoIntExp Integrates statistics of differential expression for a specified contrast with a network adjacency matrix.
DoIntFEM450k Integrates statistics of differential DNA methylation and differential expression for a specified contrast with a network adjacency matrix.
FEM Identification of interactome hotspots of differential promoter DNA methylation and differential expression
FemModShow Generates a figure showing the inferred FEM module(s)
GenStatM Generation of differential DNA methylation statistics
GenStatR Generation of differential expression statistics
probe450kfemanno Processed annotation of Illumina 450k probes for use in the FEM algorithm.
Realdata A dataset object derived from real DNA methylation and gene expression data from normal endometrial and endometrial cancer tissue
Toydata Artificial data set.