Data preprocessing and quality control for Illumina HumanMethylation450 BeadChip


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Documentation for package ‘ENmix’ version 1.4.0

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bmiq.mc A multi-processor wrapper of BMIQ method
ComBat.mc A multi-processor wrapper for ComBat method.
multifreqpoly Frequency polygon plot to display data distribution.
nmode.mc Estimating number of mode in methylaion data for each probe.
normalize.quantile.450k Quantile normalization.
pcrplot Principal component regression plot
plotCtrl Plot internal controls of 450K BeadChip.
preprocessENmix The ENmix background correction for HumanMethylation450k BeadChip
QCinfo QC information.
rm.outlier Filtering out outlier and/or low quality values