Retrieval from the DAVID bioinformatics data resource into R


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Documentation for package ‘DAVIDQuery’ version 1.29.0

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DAVIDQuery-package Retrieval from DAVID bioinformatics data resource.
affyToUniprot Obtain Affymetrix probeset IDs for given Uniprot IDs.
bracketedStrings Extract bracketed substrings.
catalogDAVIDResultsByTool Create a catalog of types of DAVID results.
convertIDList Retrieves conversions from one DAVID ID type in the input ID list to a different...
DAVIDAffyChipChoices Choices for the DAVID query parameters
DAVIDAnnotChoices Choices for the DAVID query parameters
DAVIDQuery DAVIDQuery
DAVIDQueryLoop Access DAVID multiple times.
DAVIDToolChoices Choices for the DAVID query parameters
DAVIDTypeChoices Choices for the DAVID query parameters
DAVIDURLBase Base URL for the DAVID database.
formatAnnotationReport Format the character table returned by DAVID.
formatDAVIDResult Format the character table returned by DAVID.
formatGene2Gene Format the character table returned by DAVID.
formatGeneReport Format the character table returned by DAVID.
formatGeneReportFull Format the character table returned by DAVID.
formatList Format the character table returned by DAVID.
getAffyChipTypes Retrieve all Affymetrix array type available from DAVID database.
getAffyProbesetList Retrieve Affy probeset IDs from DAVID.
getAnnotationChoices Retrieve all possible annotation values used in the annotation report tool...
getIdConversionChoices Retrieve all possible values defining the type of the submitted ID list as well as...
idExampleList idExampleList
testGene2Gene Test DAVID gene2gene tool
uniprotToAffy Obtain Affymetrix probeset IDs for given Uniprot IDs.