BEclear-package | Correct for batch effects in DNA methylation data |
BEclear | Matrix prediction method using a Latent Factor Model |
BEclear example data | Example data set for the BEclear-package |
BEclearCorrected | Correct for batch effects in DNA methylation data |
BEclearData | Example data set for the BEclear-package |
calcMedians | Calculate median difference values |
calcPvalues | Calculate p-values |
calcScore | calculate batch effect score |
calcSummary | Summarize median comparison and p-value calculation results |
clearBEgenes | Prepare a data matrix for the BEclear function |
correctBatchEffect | Correct a batch effect in DNA methylation data |
countValuesToPredict | Count NA entries in a matrix |
ex.corrected.data | Example matrix of corrected data for the BEclear-package |
ex.data | Example data set for the BEclear-package |
ex.samples | Example data set for the BEclear-package |
findWrongValues | Find DNA methylation values out of the boundaries |
makeBoxplot | produce simple predefined boxplot for methylation data |
replaceWrongValues | Replace DNA methylation values out of the boundaries |