geneFilter |
filter an ExpressionSet using different methods |
getAdjP |
access the adjPVal slot from regressResult or interactionResult class |
getAdjP-method |
Class to Contain the Regression Result Based on An Interaction Model |
getAdjP-method |
Class to Contain the Regression Result |
getAnnotation |
access the annotation slot from the regressResult or interactionResult slot |
getAnnotation-method |
Class to Contain the Regression Result Based on An Interaction Model |
getAnnotation-method |
Class to Contain the Regression Result |
getCompare1 |
Access the Compare1 slot from the contrastMatrix |
getCompare1-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getCompare2 |
Access the compare2 slot from the contrastMatrix class |
getCompare2-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getContrast |
Access the contrast matrix from the contrastMatrix class |
getContrast-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getContrast-method |
Class to Contain the Regression Result Based on An Interaction Model |
getContrast-method |
Class to Contain the Regression Result |
getCovariates |
Accessing the covariates from the designMatrix class |
getCovariates-method |
Class to Contain the Design Matrix that Used for Linear Regression |
getDesign |
Access the design matrix from the designMatrix class |
getDesign-method |
Class to Contain the Design Matrix that Used for Linear Regression |
getF |
access the foldChange slot from regressionResult or interactionResult class |
getF-method |
Class to Contain the Regression Result Based on An Interaction Model |
getF-method |
Class to Contain the Regression Result |
getFC |
Access the foldChange slot from the regressResult or interactionResult class |
getFC-method |
Class to Contain the Regression Result Based on An Interaction Model |
getFC-method |
Class to Contain the Regression Result |
getFCCutoff |
Access the significantFCCutoff slot from the regressResult or interactionResult class |
getFCCutoff-method |
Class to Contain the Regression Result Based on An Interaction Model |
getFCCutoff-method |
Class to Contain the Regression Result |
getFileName-method |
Class to Contain the Regression Result Based on An Interaction Model |
getFileName-method |
Class to Contain the Regression Result |
getFilterMethod |
Access the filterMethod slot from the regressResult or interactionResult class |
getFilterMethod-method |
Class to Contain the Regression Result Based on An Interaction Model |
getFilterMethod-method |
Class to Contain the Regression Result |
getID |
access the ID slot from the regressResult or interactionResult class |
getID-method |
Class to Contain the Regression Result Based on An Interaction Model |
getID-method |
Class to Contain the Regression Result |
getIndex |
Access the SignificantIndex slot from the regressResult or interactionResult class |
getIndex-method |
Class to Contain the Regression Result Based on An Interaction Model |
getIndex-method |
Class to Contain the Regression Result |
getInteraction |
Access the interaction slot from the contrastMatrix class |
getInteraction-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getIntIndex |
Access the IntIndex slot from the designMatrix class |
getIntIndex-method |
Class to Contain the Design Matrix that Used for Linear Regression |
getLength |
Calculate the Length of interactionResult class |
getLength-method |
Class to Contain the Regression Result Based on An Interaction Model |
getLevel |
Access the level slot from the contrastMatrix class |
getLevel-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getNormalizationMethod |
Access the significantIndex slot from the regressResult or interactionResult class |
getNormalizationMethod-method |
Class to Contain the Regression Result Based on An Interaction Model |
getNormalizationMethod-method |
Class to Contain the Regression Result |
getP |
Access the pValue slot from regressResult or interactionResult class |
getP-method |
Class to Contain the Regression Result Based on An Interaction Model |
getP-method |
Class to Contain the Regression Result |
getPCutoff |
Access the significantPvalueCutoff slot from regressResult or interactionResult class |
getPCutoff-method |
Class to Contain the Regression Result Based on An Interaction Model |
getPCutoff-method |
Class to Contain the Regression Result |
getTarget |
Access the target slots from the designMatrix class |
getTarget-method |
Class to Contain the Design Matrix that Used for Linear Regression |
selectSigGene |
select differentially expressed genes from the regressResult class |
selectSigGene-method |
Class to Contain the Regression Result Based on An Interaction Model |
selectSigGene-method |
Class to Contain the Regression Result |
selectSigGeneInt |
select differentially expressed genes from the interactionResult class |
show-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
show-method |
Class to Contain the Design Matrix that Used for Linear Regression |
show-method |
Class to Contain the Regression Result Based on An Interaction Model |
show-method |
Class to Contain the Regression Result |
Sort |
Sort a regressionResult or an interactionResult |
Sort-method |
Class to Contain the Regression Result Based on An Interaction Model |
Sort-method |
Class to Contain the Regression Result |
summary-method |
Class to Contain the Regression Result Based on An Interaction Model |
summary-method |
Class to Contain the Regression Result |