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systemPipeRdata: Workflow templates and sample data

Bioconductor version: Release (3.19)

systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.

Author: Thomas Girke

Maintainer: Thomas Girke <thomas.girke at>

Citation (from within R, enter citation("systemPipeRdata")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

systemPipeRdata: Workflow templates and sample data HTML R Script
WF: Basic Single Cell Template HTML R Script
WF: BLAST Template HTML R Script
WF: Cheminformatics Drug Similarity Template HTML R Script
WF: ChIP-Seq Workflow Template HTML R Script
WF: RIBO-Seq Workflow Template HTML R Script
WF: RNA-Seq Workflow Template HTML R Script
WF: VAR-Seq Template HTML R Script
Reference Manual PDF


biocViews Alignment, ChIPSeq, Coverage, DataImport, ExperimentData, GeneExpression, GeneSetEnrichment, Genetics, ImmunoOncology, Infrastructure, MethylSeq, QualityControl, RNASeq, RiboSeq, SNP, Sequencing, WorkflowStep
Version 2.8.0
License Artistic-2.0
Imports methods, Biostrings, BiocGenerics, jsonlite, remotes
System Requirements
See More
Suggests GenomicFeatures, GenomicRanges, IRanges, Rsamtools, ShortRead, rtracklayer, RUnit, BiocStyle, knitr, rmarkdown, systemPipeR
Linking To
Depends On Me
Imports Me
Suggests Me systemPipeR, systemPipeShiny
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package systemPipeRdata_2.8.0.tar.gz
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