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Subset of BAM files from "Pasilla" experiment

Bioconductor version: Release (3.19)

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at>

Citation (from within R, enter citation("pasillaBamSubset")):


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Reference Manual PDF


biocViews DNASeqData, ExperimentData, Genome, RNASeqData
Version 0.42.0
License LGPL
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