Registration Open for Bioc2024 July 24-26


Human macrophage immune response

Bioconductor version: Release (3.19)

This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at>

Citation (from within R, enter citation("macrophage")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Salmon quantifications for human macrophage immune response experiment HTML R Script
Reference Manual PDF


biocViews ExperimentData, RNASeqData, SequencingData
Version 1.20.0
License GPL (>= 2)
Depends R (>= 3.5.0)
System Requirements
See More
Suggests knitr, markdown
Linking To
Depends On Me
Imports Me
Suggests Me fishpond, GeDi, GeneTonic, mosdef, quantiseqr, fluentGenomics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package macrophage_1.20.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats