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RNA-seq data with different levels of gDNA contamination

Bioconductor version: Release (3.19)

Provides access to BAM files generated from RNA-seq data produced with different levels of gDNA contamination. It currently allows one to download a subset of the data published by Li et al., BMC Genomics, 23:554, 2022. This subset of data is formed by BAM files with about 100,000 alignments with three different levels of gDNA contamination.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at>

Citation (from within R, enter citation("gDNAinRNAseqData")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

RNA-seq data with different levels of gDNA contamination HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData
Version 1.4.0
License Artistic-2.0
Depends R (>= 4.3)
Imports RCurl, XML, ExperimentHub, BiocGenerics, Rsamtools
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Suggests BiocStyle, knitr, rmarkdown
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Suggests Me gDNAx
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Follow Installation instructions to use this package in your R session.

Source Package gDNAinRNAseqData_1.4.0.tar.gz
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