SimBenchData

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Bioconductor version: Release (3.19)

The SimBenchData package contains a total of 35 single-cell RNA-seq datasets covering a wide range of data characteristics, including major sequencing protocols, multiple tissue types, and both human and mouse sources.

Author: Yue Cao [aut, cre], Pengyi Yang [aut], Jean Yee Hwa Yang [aut]

Maintainer: Yue Cao <ycao6928 at uni.sydney.edu.au>

Citation (from within R, enter citation("SimBenchData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SimBenchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SimBenchData")

SimBenchData: a collection of single-cell RNA-seq data covering a wide range of data characteristics	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, RNASeqData, SequencingData, SingleCellData, Tissue
Version	1.12.0
License	GPL-3
Depends	ExperimentHub
Imports	S4Vectors, utils
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown, Seurat
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SimBenchData_1.12.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SimBenchData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SimBenchData
Package Short Url	https://bioconductor.org/packages/SimBenchData/
Package Downloads Report	Download Stats