RcisTarget.hg19.motifDBs.cisbpOnly.500bp

RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs

Bioconductor version: Release (3.19)

RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.

Author: Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium.

Maintainer: Sara Aibar <sara.aibar at kuleuven.vib.be>

Citation (from within R, enter citation("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Homo_sapiens_Data
Version	1.24.0
License	GPL-3
Depends	R (>= 3.3)
Imports	data.table
System Requirements
URL	http://scenic.aertslab.org

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.24.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Package Short Url	https://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp/
Package Downloads Report	Download Stats