RLHub
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RLHub.
An ExperimentHub package for accessing processed RLSuite data sets
Bioconductor version: Release (3.19)
| RLHub provides a convenient interface to the processed data provided within RLSuite, a tool-chain for analyzing R-loop-mapping data sets. The primary purpose of RLHub is to serve the processed data sets required by the RLSeq R package and the RLBase web service. Additionally, RLHub provides a stand-alone R interface to these data, benefiting users who are addressing questions related to R-loop regions (RL-Regions), R-loop-binding proteins (RLBPs), R-loop co-localizing factors, and the differences between R-loop-mapping methods. The full data-generating protocol is found here: https://github.com/Bishop-Laboratory/RLBase-data.
Author: Henry Miller [aut, cre, cph] 
, Alexander Bishop [ths, cph]
Maintainer: Henry Miller <millerh1 at uthscsa.edu>
citation("RLHub")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RLHub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RLHub")| Accessing RLHub Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ChIPSeqData, DNASeqData, ENCODE, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, PackageTypeData, RNASeqData, ReproducibleResearch, SequencingData |
| Version | 1.9.0 |
| License | MIT + file LICENSE |
| Depends | |
| Imports | AnnotationHub, ExperimentHub, utils |
| System Requirements | |
| URL | https://github.com/Bishop-Laboratory/RLHub https://bishop-laboratory.github.io/RLHub/ |
| Bug Reports | https://github.com/Bishop-Laboratory/RLHub/issues |
See More
| Suggests | knitr, DT, rmarkdown, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RLHub_1.9.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RLHub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RLHub |
| Package Short Url | https://bioconductor.org/packages/RLHub/ |
| Package Downloads Report | Download Stats |