DNAZooData

DNA Zoo data package

Bioconductor version: Release (3.19)

DNAZooData is a data package giving programmatic access to genome assemblies and Hi-C contact matrices uniformly processed by the [DNA Zoo Consortium](https://www.dnazoo.org/). The matrices are available in the multi-resolution `.hic` format. A URL to corrected genome assemblies in `.fastq` format is also provided to the end-user.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("DNAZooData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAZooData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAZooData")

DNAZooData	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, SequencingData
Version	1.4.0
License	MIT + file LICENSE
Depends	R (>= 4.2), HiCExperiment
Imports	BiocFileCache, S4Vectors, rjson, utils, tools
System Requirements
URL	https://github.com/js2264/DNAZooData
Bug Reports	https://github.com/js2264/DNAZooData/issues

Suggests	dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	OHCA
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DNAZooData_1.4.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/DNAZooData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DNAZooData
Package Short Url	https://bioconductor.org/packages/DNAZooData/
Package Downloads Report	Download Stats