CoSIAdata
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee
Bioconductor version: Release (3.19)
Variance Stabilized Transformation of Read Counts derived from Bgee RNA-Seq Expression Data. Expression Data includes annotations and is across 6 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Drosophila melanogaster, and Caenorhabditis elegans) and across more than 132 tissues. The data is represented as a RData files and is available in ExperimentHub.
Author: Anisha Haldar [aut] 
, Vishal H. Oza [aut] , Amanda D. Clark [cre, aut] , Nathaniel S. DeVoss [aut] , Brittany N. Lasseigne [aut]
Maintainer: Amanda D. Clark <amanda at freshairfamily.org>
citation("CoSIAdata")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CoSIAdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CoSIAdata")| CoSIAdata | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, OrganismData, PackageTypeData, RNASeqData, Rattus_norvegicus_Data, SequencingData, Tissue |
| Version | 1.4.1 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.3.0), ExperimentHub(>= 2.6.0) |
| Imports | |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/lasseignelab/CoSIAdata/issues |
See More
| Suggests | BiocStyle(>= 2.26.0), utils (>= 4.3.0), AnnotationHub(>= 3.7.3), knitr (>= 1.42) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CoSIAdata_1.4.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CoSIAdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CoSIAdata |
| Package Short Url | https://bioconductor.org/packages/CoSIAdata/ |
| Package Downloads Report | Download Stats |