SNPlocs.Hsapiens.dbSNP150.GRCh38

SNP locations for Homo sapiens (dbSNP Build 150)

Bioconductor version: Release (3.19)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 150. The source data files used for this package were created by NCBI between March 12-14, 2017, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: H. Pagès <hpages at fredhutch.org>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP150.GRCh38")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP150.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version	0.99.20
License	Artistic-2.0
Depends	BSgenome(>= 1.43.4)
Imports	methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
System Requirements
URL

Suggests	Biostrings, BSgenome.Hsapiens.UCSC.hg38
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNPlocs.Hsapiens.dbSNP150.GRCh38_0.99.20.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
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Package Short Url	https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP150.GRCh38/
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