rhdf5client

Access HDF5 content from HDF Scalable Data Service

Bioconductor version: Release (3.19)

This package provides functionality for reading data from HDF Scalable Data Service from within R. The HSDSArray function bridges from HSDS to the user via the DelayedArray interface. Bioconductor manages an open HSDS instance graciously provided by John Readey of the HDF Group.

Author: Samuela Pollack [aut], Shweta Gopaulakrishnan [aut], BJ Stubbs [aut], Alexey Sergushichev [aut], Vincent Carey [cre, aut]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("rhdf5client")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5client")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5client")

HSDSArray DelayedArray backend	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Infrastructure, Software
Version	1.26.0
In Bioconductor since	BioC 3.6 (R-3.4) (7 years)
License	Artistic-2.0
Depends	R (>= 3.6), methods, DelayedArray
Imports	httr, rjson, utils, data.table
System Requirements
URL

Suggests	knitr, testthat, BiocStyle, DT, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	phantasusLite, phantasus
Suggests Me	BiocOncoTK, HumanTranscriptomeCompendium, restfulSEData
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rhdf5client_1.26.0.tar.gz
Windows Binary (x86_64)	rhdf5client_1.26.0.zip
macOS Binary (x86_64)	rhdf5client_1.26.0.tgz
macOS Binary (arm64)	rhdf5client_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rhdf5client
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rhdf5client
Bioc Package Browser	https://code.bioconductor.org/browse/rhdf5client/
Package Short Url	https://bioconductor.org/packages/rhdf5client/
Package Downloads Report	Download Stats