receptLoss
Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors
Bioconductor version: Release (3.19)
receptLoss identifies genes whose expression is lost in subsets of tumors relative to normal tissue. It is particularly well-suited in cases where the number of normal tissue samples is small, as the distribution of gene expression in normal tissue samples is approximated by a Gaussian. Originally designed for identifying nuclear hormone receptor expression loss but can be applied transcriptome wide as well.
Author: Daniel Pique, John Greally, Jessica Mar
Maintainer: Daniel Pique <daniel.pique at med.einstein.yu.edu>
citation("receptLoss")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("receptLoss")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("receptLoss")| receptLoss | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneExpression, Software, StatisticalMethod |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.6.0) |
| Imports | dplyr, ggplot2, magrittr, tidyr, SummarizedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat (>= 2.1.0), here |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | receptLoss_1.16.0.tar.gz |
| Windows Binary (x86_64) | receptLoss_1.16.0.zip (64-bit only) |
| macOS Binary (x86_64) | receptLoss_1.16.0.tgz |
| macOS Binary (arm64) | receptLoss_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/receptLoss |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/receptLoss |
| Bioc Package Browser | https://code.bioconductor.org/browse/receptLoss/ |
| Package Short Url | https://bioconductor.org/packages/receptLoss/ |
| Package Downloads Report | Download Stats |