nethet
A bioconductor package for high-dimensional exploration of biological network heterogeneity
Bioconductor version: Release (3.19)
Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).
Author: Nicolas Staedler, Frank Dondelinger
Maintainer: Nicolas Staedler <staedler.n at gmail.com>, Frank Dondelinger <fdondelinger.work at gmail.com>
citation("nethet")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nethet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nethet")| nethet | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GraphAndNetwork, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | GPL-2 |
| Depends | |
| Imports | glasso, mvtnorm, GeneNet, huge, CompQuadForm, ggm, mclust, parallel, GSA, limma, multtest, ICSNP, glmnet, network, ggplot2, grDevices, graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, xtable, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | nethet_1.36.0.tar.gz |
| Windows Binary (x86_64) | nethet_1.36.0.zip |
| macOS Binary (x86_64) | nethet_1.36.0.tgz |
| macOS Binary (arm64) | nethet_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/nethet |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nethet |
| Bioc Package Browser | https://code.bioconductor.org/browse/nethet/ |
| Package Short Url | https://bioconductor.org/packages/nethet/ |
| Package Downloads Report | Download Stats |