multiMiR
Integration of multiple microRNA-target databases with their disease and drug associations
Bioconductor version: Release (3.19)
A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).
Author: Yuanbin Ru [aut], Matt Mulvahill [cre, aut], Spencer Mahaffey [aut], Katerina Kechris [aut, cph, ths]
Maintainer: Matt Mulvahill <matt.mulvahill at gmail.com>
citation("multiMiR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("multiMiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiMiR")
The multiMiR user's guide | HTML | R Script |
Reference Manual | ||
LICENSE | Text |
Details
biocViews | Homo_sapiens_Data, Mus_musculus_Data, OrganismData, Rattus_norvegicus_Data, Software, miRNAData |
Version | 1.26.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.4) |
Imports | stats, XML, RCurl, purrr (>= 0.2.2), tibble (>= 1.2), methods, BiocGenerics, AnnotationDbi, dplyr |
System Requirements | |
URL | https://github.com/KechrisLab/multiMiR |
Bug Reports | https://github.com/KechrisLab/multiMiR/issues |
See More
Suggests | BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | EpiMix |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | multiMiR_1.26.0.tar.gz |
Windows Binary | multiMiR_1.26.0.zip |
macOS Binary (x86_64) | multiMiR_1.26.0.tgz |
macOS Binary (arm64) | multiMiR_1.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/multiMiR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiMiR |
Bioc Package Browser | https://code.bioconductor.org/browse/multiMiR/ |
Package Short Url | https://bioconductor.org/packages/multiMiR/ |
Package Downloads Report | Download Stats |