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mirIntegrator

Integrating microRNA expression into signaling pathways for pathway analysis


Bioconductor version: Release (3.19)

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

Author: Diana Diaz <dmd at wayne dot edu>

Maintainer: Diana Diaz <dmd at wayne.edu>

Citation (from within R, enter citation("mirIntegrator")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mirIntegrator")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirIntegrator")
mirIntegrator Overview PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GraphAndNetwork, KEGG, Microarray, Network, Pathways, Software
Version 1.34.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL (>=3)
Depends R (>= 3.3)
Imports graph, ROntoTools, ggplot2, org.Hs.eg.db, AnnotationDbi, Rgraphviz
System Requirements
URL http://datad.github.io/mirIntegrator/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mirIntegrator_1.34.0.tar.gz
Windows Binary mirIntegrator_1.34.0.zip (64-bit only)
macOS Binary (x86_64) mirIntegrator_1.34.0.tgz
macOS Binary (arm64) mirIntegrator_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mirIntegrator
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mirIntegrator
Bioc Package Browser https://code.bioconductor.org/browse/mirIntegrator/
Package Short Url https://bioconductor.org/packages/mirIntegrator/
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