geNetClassifier
Classify diseases and build associated gene networks using gene expression profiles
Bioconductor version: Release (3.19)
Comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.
Author: Sara Aibar, Celia Fontanillo and Javier De Las Rivas. Bioinformatics and Functional Genomics Group. Cancer Research Center (CiC-IBMCC, CSIC/USAL). Salamanca. Spain.
Maintainer: Sara Aibar <saibar at usal.es>
citation("geNetClassifier")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("geNetClassifier")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geNetClassifier")| geNetClassifier-vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, DifferentialExpression, Microarray, Software |
| Version | 1.44.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.1), Biobase(>= 2.5.5), EBarrays, minet, methods |
| Imports | e1071, graphics, grDevices |
| System Requirements | |
| URL | http://www.cicancer.org |
See More
| Suggests | leukemiasEset, RUnit, BiocGenerics |
| Linking To | |
| Enhances | RColorBrewer, igraph, infotheo |
| Depends On Me | |
| Imports Me | bioCancer, canceR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | geNetClassifier_1.44.0.tar.gz |
| Windows Binary (x86_64) | geNetClassifier_1.44.0.zip |
| macOS Binary (x86_64) | geNetClassifier_1.44.0.tgz |
| macOS Binary (arm64) | geNetClassifier_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/geNetClassifier |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geNetClassifier |
| Bioc Package Browser | https://code.bioconductor.org/browse/geNetClassifier/ |
| Package Short Url | https://bioconductor.org/packages/geNetClassifier/ |
| Package Downloads Report | Download Stats |