flowPloidy
Analyze flow cytometer data to determine sample ploidy
Bioconductor version: Release (3.19)
Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.
Author: Tyler Smith <tyler at plantarum.ca>
Maintainer: Tyler Smith <tyler at plantarum.ca>
Citation (from within R, enter
citation("flowPloidy")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowPloidy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowPloidy")| flowPloidy: FCM Histograms | R Script | |
| flowPloidy: Getting Started | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FlowCytometry, GUI, Regression, Software, Visualization |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
| License | GPL-3 |
| Depends | |
| Imports | flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils |
| System Requirements | |
| URL | https://github.com/plantarum/flowPloidy |
| Bug Reports | https://github.com/plantarum/flowPloidy/issues |
See More
| Suggests | flowPloidyData, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowPloidy_1.30.0.tar.gz |
| Windows Binary (x86_64) | flowPloidy_1.30.0.zip |
| macOS Binary (x86_64) | flowPloidy_1.30.0.tgz |
| macOS Binary (arm64) | flowPloidy_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowPloidy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowPloidy |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowPloidy/ |
| Package Short Url | https://bioconductor.org/packages/flowPloidy/ |
| Package Downloads Report | Download Stats |