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flowMerge

Cluster Merging for Flow Cytometry Data


Bioconductor version: Release (3.19)

Merging of mixture components for model-based automated gating of flow cytometry data using the flowClust framework. Note: users should have a working copy of flowClust 2.0 installed.

Author: Greg Finak <gfinak at fhcrc.org>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>

Citation (from within R, enter citation("flowMerge")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowMerge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowMerge")
Merging Mixture Components for Cell Population Identification in Flow Cytometry Data The flowMerge Package. HTML R Script
Reference Manual PDF

Details

biocViews Clustering, FlowCytometry, ImmunoOncology, Software
Version 2.52.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License Artistic-2.0
Depends graph, feature, flowClust, Rgraphviz, foreach, snow
Imports rrcov, flowCore, graphics, methods, stats, utils
System Requirements
URL
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Suggests knitr, rmarkdown
Linking To
Enhances doMC, multicore
Depends On Me
Imports Me
Suggests Me segmenTier
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowMerge_2.52.0.tar.gz
Windows Binary flowMerge_2.52.0.zip
macOS Binary (x86_64) flowMerge_2.52.0.tgz
macOS Binary (arm64) flowMerge_2.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowMerge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowMerge
Bioc Package Browser https://code.bioconductor.org/browse/flowMerge/
Package Short Url https://bioconductor.org/packages/flowMerge/
Package Downloads Report Download Stats