flowGraph
Identifying differential cell populations in flow cytometry data accounting for marker frequency
Bioconductor version: Release (3.19)
Identifies maximal differential cell populations in flow cytometry data taking into account dependencies between cell populations; flowGraph calculates and plots SpecEnr abundance scores given cell population cell counts.
Author: Alice Yue [aut, cre]
Maintainer: Alice Yue <aya43 at sfu.ca>
Citation (from within R, enter
citation("flowGraph")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowGraph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowGraph")| flowGraph | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, FlowCytometry, ImmunoOncology, Software, StatisticalMethod, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1) |
| Imports | effsize, furrr, future, purrr, ggiraph, ggrepel, ggplot2, igraph, Matrix, matrixStats, stats, utils, visNetwork, htmlwidgets, grDevices, methods, stringr, stringi, Rdpack, data.table (>= 1.9.5), gridExtra |
| System Requirements | |
| URL | https://github.com/aya49/flowGraph |
| Bug Reports | https://github.com/aya49/flowGraph/issues |
See More
| Suggests | BiocStyle, dplyr, knitr, rmarkdown, testthat (>= 2.1.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowGraph_1.12.0.tar.gz |
| Windows Binary (x86_64) | flowGraph_1.12.0.zip |
| macOS Binary (x86_64) | flowGraph_1.12.0.tgz |
| macOS Binary (arm64) | flowGraph_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowGraph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowGraph |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowGraph/ |
| Package Short Url | https://bioconductor.org/packages/flowGraph/ |
| Package Downloads Report | Download Stats |